崔融丰
青年研究员（副教授） / 博士生导师
所属平台：演化与基因组
研究领域：行为生态学, 分子生态学, 进化基因组学, 种群遗传学，鱼类演化
Behavioral ecology, molecular ecology, evolutionary genomics, population genetics, fish evolution
联系邮箱： cuirf@mail.sysu.edu.cn
个人主页： https://lab.raycui.com
个人简历
崔融丰
性别：男
职级：副教授
导师类型：博士生导师
最高学历：博士
Emali: cuirf@mail.sysu.edu.cn
Website: http://raycui.com
Rongfeng Cui, Ph.D.
[Profile]
Associate Professor
Ph.D. advisor
Emali: cuirf@mail.sysu.edu.cn
Website: http://raycui.com
研究方向
以鱼类为主要模式系统，结合动物行为、分子生态、种群基因组学等方法研究进化生物学中的基本问题。感兴趣的方向主要为物种形成与多态性保存机制、生殖隔离的行为学机制、种间杂交、自然选择与性选择的基因组进化、近中性进化与衰老基因组学。目前实验室以斗鱼属（Macropodus）、青鳉属（Oryzias）以及虾虎鱼科（Gobiidae）为主要的研究对象，研究方法涵盖种群基因组学、转录组学、行为学、人工实验杂交等。欢迎对本方向感兴趣的同学博后来信咨询加入本组。
[Research interests]
I study basic questions in evolutionary biology using fish as model systems, combining animal behavior, molecular ecology, genomics and population genetics. Topics in our lab encompass the mechanism of speciation and maintenance of polymorphism, behavioral mechanisms of reproductive isolation, interspecific hybridization, the effects of natural and sexual selection on genome evolution, nearly neutral mutations and aging genomics.
教育经历
德州农工大学, 生物学博士 (2014.05)
中山大学, 生物科学学士(2008.06)
工作经历
2020至今, 副教授, 生态学院, 中山大学
2014-2020, 博士后, 马普衰老研究所，德国
[Curriculum Vitae]
Education
Texas A&M University, Ph.D. in Biology (2014.05)
Sun Yat-sen University, B.Sc. in Biological Sciences (2008.06)
Working experience
2020-Present, Associate Professor, School of Ecology, Sun Yat-sen University, China
2014-2020, Postdoc, Max Planck Institute for Biology of Aging, Germany
所获奖励 Awards
1、Young Investigator Award. Society for Molecular Biology and Evolution, 2019.
2、Student Award. 1 st Asian Evolutionary Research Conference，2018
3、Best Poster Award. The 2nd Cologne Ageing Conference，2016
4、Best Student Oral Paper (Division of phylogenetics & Comparative Biology). Society for integrative and comparative biology, 2013.
5、Doctoral dissertation improvement grant. National Science Foundation, 2012.
6、Rosemary Grant Award for Graduate Student Research. Society for the Study of Evolution, 2011
研究组成员
| 照片 | 姓名 | 博士生/硕士生 | 年级 | 邮件 | 导师 | 研究方向 |
|---|---|---|---|---|---|---|
 | 王忠兴 | 博士生 | 2021 | wangzhx36@mail2.sysu.edu.cn | 崔融丰 | 斗鱼种群遗传学 |
 | 邵毅 | 博士生 | 2022 | shaoy23@mail2.sysu.edu.cn | 崔融丰 | 虾虎鱼特殊性状演化的基因组基础 |
 | 赵奔驰 | 博士生 | 2023 | zhaobch7@mail.sysu.edu.cn | 崔融丰 | 鱼类嗅觉系统功能演化 |
 | 许婉莹 | 博士生 | 2024 | xuwy57@mail2.sysu.edu.cn | 崔融丰 | 鱼类进化基因组学 |
 | 耿佳林 | 博士生 | 2024 | gengjlin3@mail2.sysu.edu.cn | 崔融丰 | 鱼类进化基因组学 |
 | 姚栋基 | 硕士生 | 2022 | yaodj3@mail2.sysu.edu.cn | 崔融丰 | 特殊生境鱼类进化基因组学 |
 | 张健宇 | 硕士生 | 2023 | zhangjy663@mail2.sysu.edu.cn | 崔融丰 | 外来入侵鱼类种群遗传学 |
 | 杨文元 | 硕士生 | 2024 | yangwy67@mail2.sysu.edu.cn | 崔融丰 | 鱼类进化基因组学 |
发表论著 Publications
(† Corresponding；*Co-first)
- Z. Wang, D. Yao, B. Zhao, Y. Shao, F. Li, K-Y Ma, R. Cui*. Effective purging and conservation of heterozygous regions during independent evolution to high-level inbreeding in wild Paradise Fishes. 2025. Molecular Ecology.
- R. Cui, J. Wu, K. Yan, S. Luo, Y. Hu, W. Feng, B. Lu, J. Wang. Phased genome assemblies reveal haplotype-specific genetic load in the critically endangered Chinese Bahaba (Teleostei, Sciaenidae). 2024. Molecular Ecology.
- R. Cui, A. M. Tyers, Z. J. Malubhoy, S. Wisotsky, S. Valdesalici, E. Henriette, S. L. Kosakovsky Pond, D. R. Valenzano. Ancestral transoceanic colonization and recent population reduction in a nonannual killifish from the Seychelles archipelago. 2021. Molecular Ecology.
- R. Cui, D. Willemsen, D.R. Valenzano. Nothobranchius furzeri (African Turquoise Killifish). 2020. Trends in Genetics. DOI:10.1016/j.tig.2020.01.012.
- R. Cui†, T. Medeiros, D. Willemsen, L. N. M. Iasi, G. E. Collier, M. Graef, M. Reichard, D.R. Valenzano†. 2019. Relaxed selection limits lifespan by increasing mutation load. Cell 178(2):385-99.
- R. Cui* †, P. Delclos*, M. Schumer, G.G. Rosenthal. 2017. Early social learning triggers neurogenomic expression changes in a swordtail fish. Proc. R. Soc. B. 284(1854):20170701.
- M. Schumer, D.L. Powell, P. Delclos, M. Squire, R. Cui, P. Andolfatto, G.G. Rosenthal. 2017. Assortative mating and persistent reproductive isolation in hybrids. PNAS 114(41):10936-41.
- R. Cui†, M. Schumer, G.G. Rosenthal. 2015. Admix'em: A flexible framework for forward-time simulations of hybrid populations with selection and mate choice. Bioinformatics 32(7):1103-5.
- S. J. Ingley, M. R. Asl, C. Wu, R. Cui, M. Gadelhak, W. Li, J. Zhang, J. Simpson, C. Hash, T. Butkowski, T. Veen, J. B. Johnson, W. Yan, G. G. Rosenthal. 2015. anyFish 2.0: An open-source software platform to generate and share animated fish models to study behavior. SoftwareX 3(4):13-21.
- M. Schumer, R. Cui, D Powell, G. Rosenthal, P. Andolfatto. 2015. Ancient hybridization and genomic stabilization in a swordtail fish. Molecular Ecology 25(11):2661-79.
- D.R. Valenzano, B. Benayoun, P.P. Singh, E. Zhang, P.D. Etter, C.K. Hu, M. Clement-Ziza, D. Willemsen, R. Cui, I. Harel, B. Machado, M.C. Yee, S.C. Sharp, C.D. Bustamante, A. Beyer, E.A. Johnson, A. Brunet. 2015. The African turquoise killifish genome provides insights into
- evolution and genetic architecture of lifespan. Cell 163(6):1539-54.
- M. Schumer*†, R. Cui*†, G.G. Rosenthal and P. Andolfatto. simMSG: an experimental design tool for high-throughput genotyping of hybrids. 2015. Mol. Ecol. Res 16(1):183-92.
- M. Schumer, R. Cui, G.G. Rosenthal and P. Andolfatto. 2015. Reproductive isolation of hybrid populations driven by genetic incompatibilities. PLoS Genet 11(3): e1005041.
- M. Schumer, R. Cui, D. Powell, R. Dresner, G.G. Rosenthal, P. Andolfatto. 2014. High-resolution mapping reveals hundreds of genetic incompatibilities in hybridizing fish species. eLife 3:e02535.
- R. Cui†, X. Yang, Y. Pan and Y. Wang, 2013. A new barbeled goby from south China. Zootaxa 3670(2):177-192.
- T. Veen, S. Ingley, R. Cui, et al. 2013. anyFish: open-source software to generate animated fish models for behavioral studies. Evolutionary Ecology Research 15:361-375.
- R. Cui†, M. Schumer, K. Kruesi, R. Walter, P. Andolfatto and G.G. Rosenthal, 2013. Phylogenomics reveals extensive reticulate evolution in Xiphophorus fishes. Evolution 67(8):2166-79. Web of Science Highly Cited Paper (top 1% in Plant & Animal Sciences).
- M. Schumer, R. Cui, B. Boussau, R. Walter, G.G. Rosenthal and P. Andolfatto, 2012. An evaluation of the hybrid speciation hypothesis for Xiphophorus clemenciae based on whole genome sequences. Evolution 67(4): 1155–1168.
- T. Butkowski, W. Yan, A.M. Gray, R. Cui, M.N. Verzijden and G.G. Rosenthal, 2011. Automated interactive video playback for studies of animal communication. J. Vis. Exp. e2374
- Y. Wang, J. Yang and R. Cui. 2010. A New Species of Goniurosaurus (Squamata: Eublepharidae) from Yingde, Guangdong Province, China. Herpetologica 66:229-240.
- Y. Wang and R. Cui. 2007. The new distribution record of Ficedula narcissina owstoni in mainland China. Acta Zootaxonomica Sinica. 32(2):492-494.
